Geochemical elements, significant indicator of environmental change，have been widely used in paleoenvironment research. By comparative analysizing of sediment’s geochemical characterstics of core PJ and core ZX-1, almost opposite relations was found between them. In Holocene, there are repeated transgression-regression cycles and the deposition profile of core PJ was in the critical zone of transgression-regression. When climate was warm and humid, sea-level rose, the sedimentary environmental salinity increased and ability of element eluviate-leaching were weak, geochemical elements can not be effectively separated. On the contrary, when climate was dry and cold, sea-level became lower, the role of the element eluviate-leaching was enhanced, and different geochemical elements can be effective separated. This mechanism enables that indicators significance of core PJ’s geochemistry element changing is the opposite direction to other regions.