To improve medical students’ understanding of human body morphology and stimulate their interest in learning with the nine human systems as the center anatomy, histology and embryology, pathology as the whole. Founder Author Tool was used to make human morphological thinking mode software applied in teaching. Through peer review, student survey and feedback on teaching results, the course ware was evaluated. Founder Author Tool used to make human morphological thinking mode soft ware could obtain good results in teaching and won favorable feedback from students. This new thinking mode software used in teaching helps greatly in bettering medical students’ understanding of human body morphology, stimulating their interest in learning and improving the learning efficiency.