In this work magnetic nanorods have been synthesized by electrodeposition inside the nanotubes fixed to anodic alumina oxide (AAO). The used templates have the pore diameter of 120 nm. In the first step different combinations of 3d elements oxide nanotubes such as: CoO, NiO, NiFe2O4, CoFe2O4 and Fe3O4, have been successfully fabricated inside the nanopores by wetting chemical deposition followed by thermal decomposition. Oxide/Fe, wires were obtained in the next step by electrodeposition The morphology of obtained structures were studied by atomic force microscopy (AFM) and scanning electron microscopy (SEM). The magnetic properties of the nanostructures were determined on the base of behavior of the structures in external magnetic field. Local magnetic moment orientation is not strictly determined up to now. The potential biological application as an enzyme carrier was tested.