From the 1990s, China's higher education has experienced a rapid development, which provides Talents guarantees for Chinese economic rise and the development of social undertakings. Colleges and universities as an important carrier of higher education, attract more investments from national financial departments at all levels, social organizations and students’ families. The college education resource management increasingly becomes a hot social concern, arousing more and more scholars' research interests. Research indicates that the value of education input can be evaluated. In china, the higher education resources are infrequent, and the using efficiency can not be evaluated by analysis educational economic income of individual. This paper did a profound research on benefit of higher education from input angle based on the main components and clustering analysis method in multivariate statistics, using SPSS and R software. The result has prominent theoretical significance and practical value for high education resources management.