Alignment of DNA Sequence Using the Features of Global and Local Algorithms along with Matrices

Kavita Sharma; Amit Saxena; Praveen Kumar

doi:10.4028/www.scientific.net/AMR.403-408.2012

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HomeAdvanced Materials ResearchAdvanced Materials Research Vols. 403-408Alignment of DNA Sequence Using the Features of...

Alignment of DNA Sequence Using the Features of Global and Local Algorithms along with Matrices

Abstract:

The algorithm generated is based on designing matrices in such a way that score matrix contains the maximum scores for alignment of the DNA sequences and the aligned sequences are generated by trace matrix generated based on the score matrix. The score matrix is initialized by using Smith – Waterman algorithm and the scores used for filling up the score matrix are calculated using Needleman –Wunsch algorithm.

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Periodical:

Advanced Materials Research (Volumes 403-408)

Pages:

2012-2015

DOI:

https://doi.org/10.4028/www.scientific.net/AMR.403-408.2012

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Online since:

November 2011

Authors:

Kavita Sharma, Amit Saxena, Praveen Kumar

Keywords:

Algorithm for Sequence Alignment, DNA Alignment Using Scoring Algorithms, Needleman Algorithm, Smith Waterman Algorithm, Wunsch Algorithm

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References

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