Comparative Analysis of Mitochondrial DNA by Using Nucleotide Genomic Signals

Abstract:

The nucleotide imbalance, the nucleotide pair imbalance and the nucleotide path of mitochondrial Nucleotide Genomic Signals (mtNuGSs) for several taxa have been analyzed comparatively. Evolutionary changes of conservative segments, as well as individual mutations of hyper-variable segments have been identified. An innovative technique, based on reference-offset representation of sets of related signals has been used throughout the study.

• Periodical: Materials Science Forum (Volume 670)
• Pages: 507-516
• DOI: https://doi.org/10.4028/www.scientific.net/MSF.670.507
• Online since: December 2010
• Authors: Paul Dan Cristea, Rodica Tuduce
• Keywords: Nucleotide Complex Representation, Nucleotide Genomic Signal, Nucleotide Sequence, Reference-Offset Representation

References

[1] P.D. Cristea, Chapter 1, Representation and analysis of DNA sequences, in Genomic Signal Processing and Statistics, E. Daugherty, I. Shmulevich, J. Chen and Z.J. Wang, Eds., EURASIP Book Series on Signal Processing and Communications, Hindawi Publ. Corp., p.15–65 (2005).

[2] P.D. Cristea, J. of Cellular and Molecular Medicine, 6(2), p.279–303 (2002).

[3] IUPAC - International Union of Pure and Applied Chemistry, http: /www. iupac. org/, http: /www. bioinformatics. org/sms/iupac. html.

[4] P. D. Cristea, Signal Processing, Special Issue on Genomic Signal Processing, Elsevier, 83, (2003), pp.871-888.

DOI: 10.1016/s0165-1684(02)00477-2

[5] P.D. Cristea, D. Otelea, R. Tuduce, SPIE - BIOS 2005, Proc. of SPIE, 6, (14), pp.362-372 (2005).

[6] M. Enserink, Science, 309, p.996, (2005).

[6] P. D. Cristea, Progress in Biomedical Optics and Imaging, Proc. of SPIE, 6088, pp. P1-P12 (2006).

[7] S.T. Cole, R. Brosch, J. Parkhill, et al., Nature, 393 (6685), pp.537-544 (1998).

[8] P. D. Cristea, Progress in Biomedical Optics and Imaging, Proc. of SPIE, 6447, p. C-1 – C8 (2007).

[9] M. Krings et al., Nature, 410 (6828), p.611 (2001).

[10] P. D. Cristea, Rodica Tuduce, ISSCS 2009 – International Symposium on Signals, Circuits and Systems, Iaşi, Romania, pp.5-8 (2009).

[11] E. Chargaff, Fed. Proc., 10, p.654–659 (1951).

[12] GenBank, National Centre for Biotechnology Information, National Institutes of Health, National Library of Medicine, (NCBI/GenBank), http: /www. ncbi. nlm. nih. gov/ (2009).

[13] Nastac and P. Cristea, Proceedings of IEEE-SOFA 2005, pp.179-186 (2005).

[14] J.E. Jackson, A user guide to principal components, John Wiley, New York (1991).

[15] C. Igel, M. Husken and W. Weishui, RPROP Using the Natural Gradient, in Trends and Applications in Constructive Approximation, International Series of Numerical Mathematics, M.G. de Bruin, D.H. Mache & J. Szabados, Eds., Birkhauser, 151, pp.1-15 (2000).

DOI: 10.1007/3-7643-7356-3_19

[16] I.A. Basheer and M. Hajmeer, J. of Microbiological Methods, Elsevier Science, 43, p.3 – 31 (2000).