Sequence Analysis of the Riemerella anatipestifer OmpAMotB Gene(ORF 648bp) by Bioinformatics

Abstract:

The OmpA/MotB gene from RA by our lab was sequenced. And the molecular characteristic of this gene was analyzed with bioinformatics software. The result indicated that an open reading frame(ORF) containing 648bp nucleotides was preliminarily identified by aligning with gene bank database by software of BlastN and ORF Finder. The GC content of RA OmpA/MotB gene was 36.88% and encoded a 215 amino acids in this peptide. And from the analysis results we know that this gene sequence didn’t contain a successive at least two rare codons string. Phylogenetic tree of the amino acids sequences showed this gene has not very high similarity with the other 15 OmpA/MotB protein sequence.

• Periodical: Advanced Materials Research (Volume 647)
• Pages: 381-385
• DOI: https://doi.org/10.4028/www.scientific.net/AMR.647.381
• Online since: January 2013
• Authors: Pan Xu, An Chun Cheng, Ming Shu Wang, De Kang Zhu, Xiao Jia Wang
• Keywords: OmpA/MotB Gene, RA, Sequence Analysis Bioinformatics Analysis

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