Constructing Phylogenetic Tree Based on Three-Parameter Model

Ping Guo; Gui Fang Chen; Yan Xia Wang

doi:10.4028/www.scientific.net/KEM.474-476.2193

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HomeKey Engineering MaterialsKey Engineering Materials Vols. 474-476Constructing Phylogenetic Tree Based on...

Constructing Phylogenetic Tree Based on Three-Parameter Model

Abstract:

Neighbor Joining Algorithm (Neighbor-Joining or NJ) is a common way to construct phylogenetic trees. To enhance the accuracy of constructing the phylogenetic trees, we use the Kimura three-parameter model to calculate the distance between sequences, raising a way to improve NJ. By computer simulation, we made a comparative analysis of the accuracy among the improved NJ, UPGMA, and the original NJ, the result showing that the improved NJ is superior to UPGMA and the original NJ.

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Periodical:

Key Engineering Materials (Volumes 474-476)

Pages:

2193-2197

DOI:

https://doi.org/10.4028/www.scientific.net/KEM.474-476.2193

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Online since:

April 2011

Authors:

Ping Guo, Gui Fang Chen, Yan Xia Wang

Keywords:

Computer Simulation, Kimura Model, NJ, Phylogenetic Tree

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References

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