Fast Algorithmfor Identifying Protein-Coding Regions

Ling Ke Wang; Ji Xian Meng; Hai Peng Zhu; Xin Zhong Lu

doi:10.4028/www.scientific.net/AMR.647.471

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HomeAdvanced Materials ResearchAdvanced Materials Research Vol. 647Fast Algorithmfor Identifying Protein-Coding...

Fast Algorithmfor Identifying Protein-Coding Regions

Abstract:

Identification of protein-coding regions is a hot research area at present. After using mapping methods to turn symbolic genomic sequences into numeric sequences, we need to do the transform to show the period-3 component of protein-coding regions. In this paper, we find twofast algorithms relying on discrete Fourier transform and the extension of Signal Noise Ratio to compute the period-3 component of protein-coding regions.

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Periodical:

Advanced Materials Research (Volume 647)

Pages:

471-475

DOI:

https://doi.org/10.4028/www.scientific.net/AMR.647.471

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Online since:

January 2013

Authors:

Ling Ke Wang, Ji Xian Meng, Hai Peng Zhu, Xin Zhong Lu

Keywords:

Discrete Fourier Transform, Fast Algorithm, Period-3 Component, Protein-Coding Regions

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References

[1] M. Akhtar, J. Epps and E. Ambikairajah: Signal processing in sequence analysis: Advances in eukaryotic gene prediction, edited by IEEE Journal of Selected Topics in Signal Processing (2008).

DOI: 10.1109/jstsp.2008.923854

Google Scholar

[2] K.D. Rao and M.N.S. Swamy: Analysis of genomics and proteo, ics using DSP techniques, edited by IEEE Transactions on Circuits and Systems(2008).

Google Scholar

[3] D. Anastassiou: Genomic signal processing, edited by IEEE Signal Processing Magazine(2001).

Google Scholar

[4] Akhtar: Genomic Sequence Processing: Gene Finding in Eukaryotes, edited by Electrical Engineering &Telecommunications (2008).

Google Scholar

[5] C. Yin, S. Yau: Prediction of protein-coding regions by the 3-base periodicity analysis of a DNA sequence, edited by Journal of Theoretical Biology(2007).

DOI: 10.1016/j.jtbi.2007.03.038

Google Scholar

[6] Information onhttp: /www. ncbi. nlm. nih. gov/guide.

Google Scholar